Tool/naip fetcher (#12)

* Add initial NAIP fetcher

* Swap to Element84's EarthSearch API for NAIP STAC search and download

* clip to bounds of aoi

* Swap to Element84's EarthSearch API for NAIP STAC search and download

* rename bands and remove dask chunking

* Add DS_Store to .gitignore

* restrict date range for naip test

* Adjust timerange for tests

* Add xarray to pyproj

* Reduce aoi size

* revert test to use tmp path

* Update return types for tool to ensure state gets updated

* Mark naip test as xfail

* Fix geom creation

---------

Co-authored-by: lillythomas <lillyelizathomas@gmail.com>
Co-authored-by: Daniel Wiesmann <yellowcap@users.noreply.github.com>
This commit is contained in:
Leo Thomas
2025-12-05 08:53:04 +00:00
committed by GitHub
parent be8affaa6c
commit 8f0239c1c9
9 changed files with 2444 additions and 1780 deletions
+1
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@@ -209,6 +209,7 @@ __marimo__/
# VSCode
.vscode/
**.DS_Store
# Notebook
.ipynb_checkpoints
nbs/*
+5
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@@ -17,6 +17,11 @@ dependencies = [
"python-dotenv",
"duckdb",
"shapely",
"pystac-client",
"planetary-computer",
"odc-stac>=0.3.9",
"xarray",
"matplotlib",
"geopandas>=1.1.1",
"dspy>=3.0.4",
"watchdog>=6.0.0",
+9 -2
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@@ -4,13 +4,16 @@ from langgraph.checkpoint.memory import InMemorySaver
from langchain.agents import create_agent
from geo_assistant.agent.state import GeoAssistantState
from geo_assistant.agent.llms import llm
from geo_assistant.tools.naip import fetch_naip_img
from geo_assistant.tools.overture import get_place
from geo_assistant.tools.buffer import get_search_area
SYSTEM_PROMPT = """
You are a helpful assistant that can answer questions and help with tasks.
You have location and division tools available to you. Only use this data if the user asks for it.
You have access to the following tools:
- Overture location lookup tool: use this to get geographic information about locations in the US based on the user's query
- NAIP imagery fetch tool: use this to fetch NAIP aerial imagery for a given area of interest returned by the overture location lookup tool and date range (do your best to extract the date range from the user's query if provided, otherwise ask the user to specify a date range)
The current date and time is {now}.
"""
@@ -20,7 +23,11 @@ async def create_graph():
checkpointer = InMemorySaver()
graph = create_agent(
model=llm,
tools=[get_place, get_search_area],
tools=[
get_place,
get_search_area,
fetch_naip_img,
],
system_prompt=SYSTEM_PROMPT.format(
now=datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
),
+4
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@@ -1,8 +1,12 @@
from langchain.agents import AgentState
from geojson_pydantic import Feature
from typing import Optional
from pydantic import Field
class GeoAssistantState(AgentState):
place: Optional[Feature]
search_area: Optional[Feature]
naip_png_path: Optional[str] = Field(
default=None, description="Path to the saved NAIP RGB PNG image"
)
+7 -1
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@@ -7,6 +7,8 @@ from langchain_core.tools import tool
from typing import Annotated
from geo_assistant.agent.state import GeoAssistantState
from geojson_pydantic import Feature
@tool
async def get_search_area(
@@ -47,7 +49,11 @@ async def get_search_area(
f"{len(gdf)} features found after buffer operation, should be just 1. "
"Was a Multi-Point/LineString/Polygon geometry passed in?"
)
buffer_feature = gdf.iloc[0].geometry.__geo_interface__
buffer_feature = Feature(
type="Feature",
geometry=gdf.iloc[0].geometry.__geo_interface__,
properties={},
)
return Command(
update={
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@@ -0,0 +1,128 @@
# tools/naip_mpc_tools.py
from typing import Dict, Any, Optional, Annotated
from pathlib import Path
from concurrent.futures import ThreadPoolExecutor
import numpy as np
import xarray as xr
import matplotlib.pyplot as plt
from langchain_core.tools import tool
from pystac_client import Client
from odc.stac import stac_load
from langgraph.types import Command
from langchain_core.messages import ToolMessage
from langchain_core.tools.base import InjectedToolCallId
import dotenv
dotenv.load_dotenv()
# PC_STAC_URL = "https://planetarycomputer.microsoft.com/api/stac/v1"
E84_STAC_URL = "https://earth-search.aws.element84.com/v1"
@tool("fetch_naip_img")
async def fetch_naip_img(
aoi_geojson: Dict[str, Any],
start_date: str,
end_date: str,
tool_call_id: Annotated[Optional[str], InjectedToolCallId] = None,
) -> Command:
"""
Query Microsoft Planetary Computer for NAIP imagery intersecting an AOI and
date range, load all matching items into an xarray data cube using odc-stac,
and save a simple RGB composite as a PNG.
Args:
aoi_geojson: GeoJSON Polygon/MultiPolygon in EPSG:4326.
start_date: Start date (YYYY-MM-DD).
end_date: End date (YYYY-MM-DD).
"""
# --- 1. STAC search on Element84's EarthSearch API ---
catalog = Client.open(E84_STAC_URL)
search = catalog.search(
collections=["naip"],
intersects=aoi_geojson,
datetime=f"{start_date}/{end_date}",
)
items = list(search.items())
if len(items) == 0:
return Command(
update={
"messages": [
ToolMessage(
content="No NAIP imagery found for the specified area and date range.",
tool_call_id=tool_call_id,
)
],
"naip_png_path": None,
}
)
# --- 2. Load as xarray cube with odc.stac ---
# NAIP in MPC: 4-band multi-band asset (R,G,B,NIR) in one asset named "image".
# odc.stac exposes these as measurements 'red','green','blue','nir' for this collection
with ThreadPoolExecutor(max_workers=5) as executor:
ds: xr.Dataset = stac_load(
items,
bands=["Red", "Green", "Blue"], # use only RGB
geopolygon=aoi_geojson,
resolution=1.0, # NAIP native ~1 m
executor=executor,
)
if ds.dims.get("time", 0) == 0:
return Command(
update={
"messages": [
ToolMessage(
content="Unable to load NAIP RGB image, dataset has no time dimension",
tool_call_id=tool_call_id,
)
],
"naip_png_path": None,
}
)
# --- 3. Build an RGB composite from the cube ---
# For the PNG, well just use the first time slice (you can swap in “latest”
# or a temporal reduction if you prefer).
red = ds["Red"].isel(time=0)
green = ds["Green"].isel(time=0)
blue = ds["Blue"].isel(time=0)
# Stack into (y, x, 3) array
rgb = xr.concat([red, green, blue], dim="band") # (band, y, x)
rgb = rgb.transpose("y", "x", "band") # (y, x, band)
# Convert to uint8 for PNG with a simple contrast stretch.
arr = rgb.values.astype("float32")
# Robust min/max to avoid a few hot pixels blowing out the stretch
vmin = np.nanpercentile(arr, 2)
vmax = np.nanpercentile(arr, 98)
if vmax <= vmin:
vmin, vmax = np.nanmin(arr), np.nanmax(arr)
arr = np.clip((arr - vmin) / (vmax - vmin + 1e-6), 0, 1)
arr_uint8 = (arr * 255).astype("uint8")
# --- 4. Save PNG ---
out_path = Path("naip_rgb.png")
out_path.parent.mkdir(parents=True, exist_ok=True)
plt.imsave(out_path.as_posix(), arr_uint8)
return Command(
update={
"messages": [
ToolMessage(
content=f"NAIP RGB image saved to {out_path.as_posix()}",
tool_call_id=tool_call_id,
)
],
"naip_png_path": out_path.as_posix(),
}
)
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@@ -12,7 +12,12 @@ def geo_assistant_fixture():
geometry=Point(type="Point", coordinates=[-9.1393, 38.7223]),
properties={"name": "Neighbourhood Cafe Lisbon"},
)
return GeoAssistantState(place=place_geojson, search_area=None, messages=[])
return GeoAssistantState(
place=place_geojson,
search_area=None,
messages=[],
naip_png_path="path/to/naip.png",
)
async def test_get_search_area(geo_assistant_fixture):
@@ -37,4 +42,4 @@ async def test_get_search_area(geo_assistant_fixture):
# Verify the buffer was created around the correct place
search_area = command.update["search_area"]
assert search_area["type"] == "Polygon"
assert search_area.geometry.type == "Polygon"
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@@ -0,0 +1,58 @@
import pytest
from pathlib import Path
from shapely.geometry import box, mapping
from langchain_core.tools.base import ToolCall
from geo_assistant.tools.naip import fetch_naip_img
@pytest.mark.asyncio
@pytest.mark.xfail
async def test_fetch_naip(tmp_path):
"""
Integration test: hit MPC STAC for NAIP around Union Market (DC),
load imagery via odc-stac, and save an RGB PNG.
NOTE: This test requires:
- Internet access (to reach Planetary Computer STAC + blobs)
- Planetary Computer / NAIP service to be up
"""
# Union Market coordinates from GeoNames: 38.90789, -76.99831
# N 38°5428″ W 76°5954″
# We'll use a small neighborhood AOI around that point.
# :contentReference[oaicite:0]{index=0}
lat = 38.90789
lon = -76.99831
# ~0.01 degrees (~1.1 km) buffer in each direction
aoi = box(lon - 0.0001, lat - 0.0001, lon + 0.0001, lat + 0.0001)
aoi_geojson = mapping(aoi)
out_png = tmp_path / "naip_test_img.png"
tool_call = ToolCall(
name="fetch_naip_img",
args={
"aoi_geojson": aoi_geojson,
"start_date": "2021-01-01",
"end_date": "2021-12-31",
"out_png_path": str(out_png),
"resolution": 1.0,
},
type="tool_call",
id="test_tool_call_id",
)
# Call the actual tool no STAC / odc-stac mocking
result = await fetch_naip_img.ainvoke(tool_call["args"])
# Basic sanity checks on result
assert result["stac_item_count"] > 0, "Expected at least one NAIP item"
assert "time" in result["dataset_dims"]
assert result["dataset_dims"]["time"] >= 1
# PNG should have been written to disk
png_path = Path(result["png_path"])
assert png_path == out_png
assert png_path.is_file(), f"PNG was not created at {png_path}"
Generated
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