Files
tippecanoe/sort.cpp
T
Erica Fischer d7bdbe363b Reduce maximum memory used for vertex sorting (#170)
* Add logging for out-of-memory debugging

* Use less memory for sub-sorting

* Reduce maximum memory used for vertex sorting
2023-11-30 13:48:50 -08:00

128 lines
2.8 KiB
C++

#include <stdio.h>
#include <stdlib.h>
#include <unistd.h>
#include <vector>
#include <string>
#define MAX_MEMORY (1024 * 1024 * 1024) // 1 GB
void fqsort(std::vector<FILE *> &inputs, size_t width, int (*cmp)(const void *, const void *), FILE *out, size_t mem) {
std::string pivot;
FILE *fp1, *fp2;
if (mem > MAX_MEMORY) {
mem = MAX_MEMORY;
}
{
// read some elements into memory to choose a pivot from
//
// this is in its own scope so `buf` can go out of scope
// before trying to do any sub-sorts.
std::string buf;
bool read_everything = false;
for (size_t i = 0; i < inputs.size(); i++) {
if (buf.size() > mem) {
break;
}
while (true) {
std::string element;
element.resize(width);
size_t n = fread((void *) element.c_str(), width, 1, inputs[i]);
if (n == 0) {
if (i + 1 == inputs.size()) {
read_everything = true;
}
break;
}
buf.append(element);
if (buf.size() > mem) {
break;
}
}
}
qsort((void *) buf.c_str(), buf.size() / width, width, cmp);
// If that was everything we have to sort, we are done.
if (read_everything) {
fwrite((void *) buf.c_str(), buf.size() / width, width, out);
return;
}
// Otherwise, choose a pivot from it, make some temporary files,
// write what we have to those files, and then partition the rest
// of the input into them.
// This would be unstable if the pivot is one of several elements
// that compare equal. Does it matter?
size_t pivot_off = width * (buf.size() / width / 2);
pivot = std::string(buf, pivot_off, width);
std::string t1 = "/tmp/sort1.XXXXXX";
std::string t2 = "/tmp/sort2.XXXXXX";
int fd1 = mkstemp((char *) t1.c_str());
unlink(t1.c_str());
int fd2 = mkstemp((char *) t2.c_str());
unlink(t2.c_str());
fp1 = fdopen(fd1, "w+b");
if (fp1 == NULL) {
perror(t1.c_str());
exit(EXIT_FAILURE);
}
fp2 = fdopen(fd2, "w+b");
if (fp2 == NULL) {
perror(t2.c_str());
exit(EXIT_FAILURE);
}
fwrite((void *) buf.c_str(), sizeof(char), pivot_off, fp1);
fwrite((void *) ((char *) buf.c_str() + pivot_off), sizeof(char), buf.size() - pivot_off, fp2);
}
// read the remaining input into the temporary files
for (size_t i = 0; i < inputs.size(); i++) {
while (true) {
std::string element;
element.resize(width);
size_t n = fread((void *) element.c_str(), width, 1, inputs[i]);
if (n == 0) {
break;
}
if (cmp((void *) element.c_str(), (void *) pivot.c_str()) < 0) {
fwrite((void *) element.c_str(), width, 1, fp1);
} else {
fwrite((void *) element.c_str(), width, 1, fp2);
}
}
}
// Now sort the sub-ranges into the output.
rewind(fp1);
rewind(fp2);
std::vector<FILE *> v1;
v1.emplace_back(fp1);
fqsort(v1, width, cmp, out, mem);
fclose(fp1);
std::vector<FILE *> v2;
v2.emplace_back(fp2);
fqsort(v2, width, cmp, out, mem);
fclose(fp2);
}